PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g090480.1
Common NameMTR_2g090480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 220aa    MW: 24551.2 Da    PI: 6.8827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g090480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-091767455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                       +++E++RR++++  f++L +llP+ +   p++  l   + + +A++YIk L+
  Medtr2g090480.1 17 ERKIVEKNRRNQMKILFSNLNSLLPSyN---PKELaLPLPDQVDEAINYIKRLE 67
                     5689**********************66...55555***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-101183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.9821366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-91583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-61767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDQNQQGGRP SSSTKVERKI VEKNRRNQMK ILFSNLNSLL PSYNPKELAL PLPDQVDEAI  60
NYIKRLETNI KLAKEKKESL MGNKRSRGDC SSSSGAKGII KLPKIEIHEM GPTLQIIVTC  120
GVDEHFIFCE IMRILHEENV EVISSNTSLT GHSLLHTVHA QIPQSLLQFG ETKISERLKA  180
FVNGSVSDVE TEPLLWDLEI GSESWELLHS VVTKSLPNP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465113.11e-160helix loop helix DNA-binding domain protein
TrEMBLA0A072VCG21e-160A0A072VCG2_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA06G44660.22e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-33bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]